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Extract ScoredMatch Objects (INTERNAL)

extract_ScoredMatch.Rd

Extracts mapping results from specialized ScoredMatch python objects (as defined by GILDA) AT THE LEVEL of individual mappings.

Usage

extract_ScoredMatch(py_ScoredMatch, prefix = NULL, prefix_sep = ":")

Arguments

py_ScoredMatch

A GILDA ScoredMatch (python) object.

prefix

Optional prefix to add to namespace local unique identifiers (LUI; e.g. 4, the LUI for "disease" in DO), as a string; preferably to create a complete namespace ID (e.g. "DOID:4").

prefix_sep

Optional separator placed between prefix and namespace LUIs, as a string. Ignored if prefix = NULL.