Namespace Prefixes
ns_prefix.RdPrefixes for namespaces, primarily sourced from
ROBOT, that cover most uses in OBO Foundry
ontologies, with slight modification to match the prefixes as used in the
Human Disease Ontology and a few additional prefixes for cross-references and
DO-related SPARQL query support. These prefixes should be up-to-date with
the latest OBO Foundry ontologies (https://github.com/ontodev/robot/issues/51).
Format
Character vectors of namespaces named by their corresponding prefix:
ns_prefix: Superset of all 546 prefix/namespaces listed
below.
not_obo_prefix: 21 prefix/namespaces
outside but commonly used in the OBO Foundry
(e.g. dc = "http://purl.org/dc/elements/1.1/"),
or in federated SPARQL queries with the DO
(e.g. up = "http://purl.uniprot.org/core/").
obo_prefix: Superset of all 525 OBO Foundry
prefix/namespaces, including those listed below and, additionally, including
the general obo prefix.
obo_ont_prefix: 261 OBO Foundry ontology
primary prefix/namespaces
(e.g. AAO = "http://purl.obolibrary.org/obo/AAO_").
obo_prop_prefix: oboInOwl (along with the common prefix variant
oio) and 262 OBO Foundry ontology property
namespaces (these may not all be in actual use)
(e.g. aao = "http://purl.obolibrary.org/obo/aao#")