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Plot Branch Counts

plot_branch_counts.Rd

Plots the count of non-obsolete terms in each major branch of the Human Disease Ontology.

Usage

plot_branch_counts(
  DO_repo,
  out_dir = "graphics/website",
  w = 8,
  h = 5.6,
  aspect_ratio = 1,
  .robot_path = NULL
)

Arguments

DO_repo

The local path to the HumanDiseaseOntology repo, as a string.

out_dir

The directory where the plot "DO_branch_count.png" should be saved, as a string. If NULL, the plot is not saved to disk.

w

The width of the plot in inches, as numeric.

h

The height of the plot in inches, as numeric.

aspect_ratio

The aspect ratio of the panel (i.e. plot area), as numeric. If NULL, the aspect ratio will not be set.

.robot_path

The path to a ROBOT executable or .jar file, as a string. When NULL (default), if a system ROBOT executable is available it will be used, otherwise an error will be signaled.

NOTE: DO.utils caches the last ROBOT used for future use.