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Plot Xref Counts

plot_xref_counts.Rd

Plots the count of cross-references by source in the Human Disease Ontology.

Usage

plot_xref_counts(
  DO_repo,
  out_dir = "graphics/website",
  w = 8,
  h = 5.6,
  .robot_path = NULL
)

Arguments

DO_repo

The local path to the HumanDiseaseOntology repo, as a string.

out_dir

The directory where the plot "DO_xref_count.png" should be saved, as a string. If NULL the plot is not saved to disk.

w

The width of the plot in inches, as numeric.

h

The height of the plot in inches, as numeric.

.robot_path

The path to a ROBOT executable or .jar file, as a string. When NULL (default), if a system ROBOT executable is available it will be used, otherwise an error will be signaled.

NOTE: DO.utils caches the last ROBOT used for future use.